Most often it is resistance wire being used, or at least being the choice. It seems to be a "no-brainer" that I want good copper wire and not that flakey carbon stuff right?
Well, not so fast.
Until the spark jumps, there is no current, and resistance is not much of a factor UNLESS you have a fouled plug that is conducting. In that case the copper wire will bleed voltage off before the jump. Resistance plugs and/or wires work better under fouling conditions. They allow for a higher voltage spark.
Another issue is the current through the coil. Yes it can be too much if copper is used, but there is another effect of a "bouncing" AC voltage in the coil after the spark. Resistance helps to dampen this out. It is especially important at high rpm.
Most coils are pretty tough, our bikes will live and run with either resistance or non-resistance components and hard to tell the performance difference between them. Although non-R seems to make intuitive sense, I'd suggest to lean toward resistance components where you can.