It is the pilot jet, not the main jet. Does everyone know the main jet and the pilot jet are larger on the HS carburetor? Normally the HS motor will rev higher than the Honda, because of the slightly larger main jet.
For some reason the carburetor is hard to clean, as many have sent them to me and the fix is almost always a serious cleaning and testing. On several occasions it was necessary to clean more than once.
If you have a "clear" filter, you might be able to watch for slow flow, which as you noted may be causing the bowl to empty at W.O.T.
Have fun,