It almost looks like the bolt is broken off in the crank. It's hard to tell in the pic, if it's broken off you'll need to get the broken part out first. It will eventually come off if you keep riding it. When using the puller to remove it, first thing is to clean the threads and get all the old loctite and crap out of the threads so that the puller threads into the bevel gear all the way. Heating the bevel gear with a propane torch also helps loosen up any loctite that maybe holding it on. Once you get it off you may find that the key way is now bent or twisted and the crankshaft damaged under the bevel gear. With 5400 miles your money might be better spent on a whole new engine. You can only polish a turd so many times before you should just give it a flush.