I think the term angle is universal among authors, I've seen the term used by Jennings,Bell and Blair in their books.
I can see why they use angle instead of duration, if discussing disc valve induction, you can have asymetrical opening and closing points in crankshaft degrees, in this case simply using duration figures would not be accurate.
The key thing is which angle they are reffering to. The MOTA free pipe designer is based on Blairs software and it uses the angle from TDC to exhaust port open as the input value, where Martin Hepperles software uses the duration and inputs that value expresed as angle.
One thing to remember when using Martins program* is that EGT temp is in Kelvin. Which is Celsius + 273.15.
Most of the authords recommend using EGT between 500 and 650 C.For a street ridden bike I would use the lower 500 C value.While the pipe temp itself does influence wave motion inside, the real temp we are looking for is the exhaust gas temp inside the pipe, the speed at which pulse waves travel are regulated by the gas temp.
As noted by Jennings, Bell and Blair the pipe formulas are a starting point, not the last word in pipe design for a particular set of parameters.So if you a little off with EGT there are probably other areas of the pipe design that could use some tweaking.For us average working stiffs, putting the pipe on an adjustable length header so we can tune the length works well enough.
*added my version of Martin Hepperles program is older, I'm not sure what the newer program looks like as my computer doesn't support the java needed to run it